IL_7O7Z_033

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

7O7Z|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_033 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.178

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7O7Z|1|A2|G|612
7O7Z|1|A2|U|613
7O7Z|1|A2|G|614
7O7Z|1|A2|C|615
7O7Z|1|A2|C|616
7O7Z|1|A2|A|617
7O7Z|1|A2|G|618
*
7O7Z|1|A2|C|625
7O7Z|1|A2|G|626
7O7Z|1|A2|G|627
7O7Z|1|A2|OMU|628
7O7Z|1|A2|A|629
7O7Z|1|A2|A|630
7O7Z|1|A2|U|631
7O7Z|1|A2|U|632
7O7Z|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain AH

Coronavirus frameshifting stimulation element

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23