IL_7O7Z_035

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_035 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1282

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7O7Z|1|A2|G|666
7O7Z|1|A2|U|667
7O7Z|1|A2|U|668
7O7Z|1|A2|A2M|669
7O7Z|1|A2|A|670
7O7Z|1|A2|A|671
7O7Z|1|A2|A|672
*
7O7Z|1|A2|U|1162
7O7Z|1|A2|C|1163

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Ribosomal protein eS26

Chain Ab

Ribosomal protein uS5

Chain Aw

40S ribosomal protein S23