IL_7O7Z_040
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCUCUC*GAAG
- Length
- 10 nucleotides
- Bulged bases
- 7O7Z|1|A2|U|748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_040 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3751
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7O7Z|1|A2|C|746
7O7Z|1|A2|C|747
7O7Z|1|A2|U|748
7O7Z|1|A2|C|749
7O7Z|1|A2|U|750
7O7Z|1|A2|C|751
*
7O7Z|1|A2|G|794
7O7Z|1|A2|A|795
7O7Z|1|A2|A|796
7O7Z|1|A2|G|797
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Af
- 40S ribosomal protein S6
- Chain Ag
- 40S ribosomal protein S7
- Chain Ak
- 40S ribosomal protein S11
Coloring options: