IL_7O7Z_064
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7O7Z|1|A2|C|1216, 7O7Z|1|A2|C|1217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_064 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.0907
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7O7Z|1|A2|A|1215
7O7Z|1|A2|C|1216
7O7Z|1|A2|C|1217
7O7Z|1|A2|A|1218
*
7O7Z|1|A2|U|1682
7O7Z|1|A2|C|1683
7O7Z|1|A2|C|1684
7O7Z|1|A2|C|1685
7O7Z|1|A2|U|1686
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- Ribosomal protein S28
- Chain AE
- Ribosomal protein eS26
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AT
- Transfer RNA; tRNA
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- uS9
Coloring options: