IL_7O7Z_074

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

7O7Z|1|A2|U|1495, 7O7Z|1|A2|G|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_074 not in the Motif Atlas

Homologous match to IL_4V88_451

Geometric discrepancy: 0.1051

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7O7Z|1|A2|U|1334
7O7Z|1|A2|G|1335
7O7Z|1|A2|G|1336
*
7O7Z|1|A2|U|1493
7O7Z|1|A2|C|1494
7O7Z|1|A2|U|1495
7O7Z|1|A2|G|1496
7O7Z|1|A2|U|1497
7O7Z|1|A2|G|1498
7O7Z|1|A2|A|1499

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ac

40S ribosomal protein S3

Chain Aj

eS10

Chain At

40S ribosomal protein uS10