IL_7O7Z_121

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUU*G(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_121 not in the Motif Atlas

Geometric match to IL_1N33_070

Geometric discrepancy: 0.1561

The information below is about IL_1N33_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7O7Z|1|B5|C|390
7O7Z|1|B5|U|391
7O7Z|1|B5|U|392
*
7O7Z|1|B5|G|399
7O7Z|1|B5|A2M|400
7O7Z|1|B5|G|401

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BY

Ribosomal protein L26