IL_7O7Z_186
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7O7Z|1|B5|A|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_186 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.1642
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7O7Z|1|B5|U|1896
7O7Z|1|B5|A|1897
7O7Z|1|B5|U|1898
7O7Z|1|B5|A|1899
7O7Z|1|B5|G|1900
7O7Z|1|B5|A|1901
7O7Z|1|B5|C|1902
7O7Z|1|B5|A|1903
7O7Z|1|B5|G|1904
*
7O7Z|1|B5|C|1961
7O7Z|1|B5|C|1962
7O7Z|1|B5|G|1963
7O7Z|1|B5|A|1964
7O7Z|1|B5|A|1965
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BS
- Ribosomal protein eL20
- Chain Bm
- 60S ribosomal protein L40
- Chain Bs
- 60S acidic ribosomal protein P0
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