IL_7O7Z_198

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|G|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_198 not in the Motif Atlas

Geometric match to IL_5J7L_282

Geometric discrepancy: 0.2276

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7O7Z|1|B5|G|2385
7O7Z|1|B5|A|2386
7O7Z|1|B5|G|2387
7O7Z|1|B5|U|2388
7O7Z|1|B5|G|2389
7O7Z|1|B5|G|2390
*
7O7Z|1|B5|C|2615
7O7Z|1|B5|G|2616
7O7Z|1|B5|C|2617

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bk

eL38