IL_7O7Z_268
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_268 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0837
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7O7Z|1|B5|C|4342
7O7Z|1|B5|U|4343
7O7Z|1|B5|C|4344
7O7Z|1|B5|A|4345
7O7Z|1|B5|G|4346
7O7Z|1|B5|U|4347
7O7Z|1|B5|A|4348
7O7Z|1|B5|C|4349
*
7O7Z|1|B5|G|4354
7O7Z|1|B5|G|4355
7O7Z|1|B5|A|4356
7O7Z|1|B5|A|4357
7O7Z|1|B5|C|4358
7O7Z|1|B5|C|4359
7O7Z|1|B5|G|4360
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BH
- 60S ribosomal protein L9
- Chain BV
- Ribosomal protein L23
- Chain Bm
- 60S ribosomal protein L40
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