IL_7O7Z_284

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|G|4788

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_284 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.3288

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|G|4739
7O7Z|1|B5|PSU|4740
7O7Z|1|B5|U|4741
*
7O7Z|1|B5|G|4784
7O7Z|1|B5|U|4785
7O7Z|1|B5|C|4786
7O7Z|1|B5|A|4787
7O7Z|1|B5|G|4788
7O7Z|1|B5|C|4789

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Bd

eL31