IL_7O7Z_335

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_335 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.091

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7O7Z|1|B5|G|2201
7O7Z|1|B5|U|2202
7O7Z|1|B5|A|2203
7O7Z|1|B5|G|2204
7O7Z|1|B5|U|2205
7O7Z|1|B5|A2M|2206
7O7Z|1|B5|OMG|2207
*
7O7Z|1|B5|C|3590
7O7Z|1|B5|G|3591
7O7Z|1|B5|A|3592
7O7Z|1|B5|A|3593
7O7Z|1|B5|A|3594
7O7Z|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BP

uL22