IL_7O7Z_337

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_337 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.2996

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|A|2675
7O7Z|1|B5|A|2676
7O7Z|1|B5|C|2677
7O7Z|1|B5|A|2678
7O7Z|1|B5|A|2679
7O7Z|1|B5|OMU|2680
7O7Z|1|B5|G|2681
*
7O7Z|1|B5|C|3582
7O7Z|1|B5|PSU|3583
7O7Z|1|B5|A|3584
7O7Z|1|B5|PSU|3585

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22

Chain Bd

eL31