IL_7O7Z_353

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7O7Z|1|B5|U|4380, 7O7Z|1|B5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_353 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2929

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7O7Z|1|B5|U|4378
7O7Z|1|B5|G|4379
7O7Z|1|B5|U|4380
7O7Z|1|B5|A|4381
7O7Z|1|B5|PSU|4382
7O7Z|1|B5|OMG|4383
*
7O7Z|1|B5|C|4408
7O7Z|1|B5|G|4409
7O7Z|1|B5|A|4410
7O7Z|1|B5|A|4411
7O7Z|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

eL24

Chain Bd

eL31