IL_7O80_004
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 7O80|1|A2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_004 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.117
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7O80|1|A2|G|41
7O80|1|A2|A|42
7O80|1|A2|U|43
7O80|1|A2|U|44
7O80|1|A2|A|45
7O80|1|A2|A|46
7O80|1|A2|G|47
*
7O80|1|A2|C|480
7O80|1|A2|G|481
7O80|1|A2|C|482
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Aw
- 40S ribosomal protein S23
- Chain Bz
- ATP binding cassette subfamily E member 1
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