IL_7O80_079

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

7O80|1|A2|C|1404, 7O80|1|A2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_079 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1464

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|A2|A|1403
7O80|1|A2|C|1404
7O80|1|A2|U|1405
7O80|1|A2|A|1406
*
7O80|1|A2|U|1442
7O80|1|A2|OMU|1443
7O80|1|A2|C|1444
7O80|1|A2|U|1445

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

Ribosomal protein S16

Chain At

40S ribosomal protein uS10