IL_7O80_080

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7O80|1|A2|C|1434, 7O80|1|A2|C|1435, 7O80|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_080 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2488

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7O80|1|A2|U|1409
7O80|1|A2|A|1410
*
7O80|1|A2|U|1433
7O80|1|A2|C|1434
7O80|1|A2|C|1435
7O80|1|A2|C|1436
7O80|1|A2|C|1437
7O80|1|A2|C|1438
7O80|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

Ribosomal protein S16

Chain At

40S ribosomal protein uS10