IL_7O80_140

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7O80|1|B5|G|743, 7O80|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_140 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2279

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|B5|G|740
7O80|1|B5|A|741
7O80|1|B5|A|742
7O80|1|B5|G|743
7O80|1|B5|G|744
7O80|1|B5|U|745
7O80|1|B5|G|746
7O80|1|B5|G|747
*
7O80|1|B5|U|808
7O80|1|B5|G|809
7O80|1|B5|U|810
7O80|1|B5|U|811
7O80|1|B5|A|812
7O80|1|B5|C|813
7O80|1|B5|A|814
7O80|1|B5|G|815
7O80|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein L18a