IL_7O80_153

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_153 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2812

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|B5|G|1380
7O80|1|B5|G|1381
7O80|1|B5|A|1382
7O80|1|B5|U|1383
7O80|1|B5|C|1384
*
7O80|1|B5|G|1410
7O80|1|B5|C|1411
7O80|1|B5|G|1412
7O80|1|B5|C|1413
7O80|1|B5|A|1414
7O80|1|B5|C|1415

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Ribosomal protein L18

Chain Bb

60S ribosomal protein L29