IL_7O80_157

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_157 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.1857

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7O80|1|B5|C|1429
7O80|1|B5|G|1430
7O80|1|B5|C|1431
*
7O80|1|B5|G|1444
7O80|1|B5|G|1445

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42