IL_7O80_171
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGAA(PSU)G*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 7O80|1|B5|G|1680
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_171 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2691
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O80|1|B5|G|1678
7O80|1|B5|C|1679
7O80|1|B5|G|1680
7O80|1|B5|A|1681
7O80|1|B5|A|1682
7O80|1|B5|PSU|1683
7O80|1|B5|G|1684
*
7O80|1|B5|C|1724
7O80|1|B5|A|1725
7O80|1|B5|A|1726
7O80|1|B5|A|1727
7O80|1|B5|C|1728
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- eL21
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