IL_7O80_177
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 7O80|1|B5|U|2009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_177 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1124
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7O80|1|B5|U|1844
7O80|1|B5|U|1845
7O80|1|B5|A|1846
7O80|1|B5|A|1847
7O80|1|B5|G|1848
*
7O80|1|B5|C|2006
7O80|1|B5|C|2007
7O80|1|B5|A|2008
7O80|1|B5|U|2009
7O80|1|B5|A|2010
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- Ribosomal Protein uL30
- Chain BQ
- Ribosomal protein L18
- Chain Be
- eL32
- Chain Bf
- eL33
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