IL_7O80_195

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7O80|1|B5|G|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_195 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.5402

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7O80|1|B5|G|2385
7O80|1|B5|A|2386
7O80|1|B5|G|2387
7O80|1|B5|U|2388
7O80|1|B5|G|2389
7O80|1|B5|G|2390
*
7O80|1|B5|C|2615
7O80|1|B5|G|2616
7O80|1|B5|C|2617

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bk

eL38