IL_7O80_197

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_197 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1692

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7O80|1|B5|C|2432
7O80|1|B5|G|2433
7O80|1|B5|A|2434
7O80|1|B5|U|2435
7O80|1|B5|C|2436
*
7O80|1|B5|G|2595
7O80|1|B5|G|2596
7O80|1|B5|G|2597
7O80|1|B5|A|2598
7O80|1|B5|G|2599

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34