IL_7O80_255

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7O80|1|B5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_255 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3984

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|B5|U|4214
7O80|1|B5|U|4215
7O80|1|B5|G|4216
*
7O80|1|B5|C|4231
7O80|1|B5|C|4232
7O80|1|B5|A|4233
7O80|1|B5|A|4234
7O80|1|B5|G|4235

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein L13a

Chain Bm

60S ribosomal protein L40