IL_7O80_309
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC(PSU)*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_309 not in the Motif Atlas
- Homologous match to IL_8P9A_432
- Geometric discrepancy: 0.359
- The information below is about IL_8P9A_432
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
7O80|1|A2|C|1231
7O80|1|A2|C|1232
7O80|1|A2|PSU|1233
*
7O80|1|A2|G|1527
7O80|1|A2|C|1528
7O80|1|A2|G|1529
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain Ap
- Ribosomal protein S16
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- Ribosomal protein eS19
- Chain At
- 40S ribosomal protein uS10
- Chain Ay
- 40S ribosomal protein S25
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