IL_7O80_336

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7O80|1|B5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_336 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1217

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7O80|1|B5|G|1940
7O80|1|B5|A|1941
7O80|1|B5|G|1942
7O80|1|B5|U|1943
7O80|1|B5|G|1944
*
7O80|1|B5|C|1953
7O80|1|B5|U|1954
7O80|1|B5|C|1955

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

Ribosomal protein L12