IL_7O80_343
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (PSU)CA(A2M)AGU*AA(PSU)GAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_343 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.2884
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O80|1|B5|PSU|3447
7O80|1|B5|C|3448
7O80|1|B5|A|3449
7O80|1|B5|A2M|3450
7O80|1|B5|A|3451
7O80|1|B5|G|3452
7O80|1|B5|U|3453
*
7O80|1|B5|A|3464
7O80|1|B5|A|3465
7O80|1|B5|PSU|3466
7O80|1|B5|G|3467
7O80|1|B5|A|3468
7O80|1|B5|A|3469
7O80|1|B5|G|3470
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AI
- E-site tRNA
- Chain BA
- Ribosomal protein uL2
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
- Chain Bv
- Ribosomal protein
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