IL_7O80_346

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CGGCG

Length

9 nucleotides

Bulged bases

7O80|1|B5|C|3891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_346 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.3215

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

7O80|1|B5|C|3866
7O80|1|B5|C|3867
7O80|1|B5|C|3868
7O80|1|B5|G|3869
*
7O80|1|B5|C|3888
7O80|1|B5|G|3889
7O80|1|B5|G|3890
7O80|1|B5|C|3891
7O80|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains