IL_7O80_351
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (OMC)(PSU)C*G(PSU)G(A2M)G
- Length
- 8 nucleotides
- Bulged bases
- 7O80|1|B5|G|4268, 7O80|1|B5|A2M|4269
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_351 not in the Motif Atlas
- Homologous match to IL_8C3A_116
- Geometric discrepancy: 0.3302
- The information below is about IL_8C3A_116
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7O80|1|B5|OMC|4202
7O80|1|B5|PSU|4203
7O80|1|B5|C|4204
*
7O80|1|B5|G|4266
7O80|1|B5|PSU|4267
7O80|1|B5|G|4268
7O80|1|B5|A2M|4269
7O80|1|B5|G|4270
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BK
- Replicase polyprotein 1ab
- Chain BV
- Ribosomal protein L23
- Chain By
- Eukaryotic peptide chain release factor subunit 1
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