3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
7O81|1|A2|U|362, 7O81|1|A2|C|400
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O81_020 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.1029
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7O81|1|A2|U|360
7O81|1|A2|A|361
7O81|1|A2|U|362
7O81|1|A2|C|363
7O81|1|A2|A|364
7O81|1|A2|A|365
*
7O81|1|A2|U|397
7O81|1|A2|G|398
7O81|1|A2|A|399
7O81|1|A2|C|400
7O81|1|A2|C|401
7O81|1|A2|A|402
7O81|1|A2|C|403
7O81|1|A2|G|404

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ah
40S ribosomal protein S8
Chain Ak
40S ribosomal protein S11
Chain Aw
40S ribosomal protein S23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.389 s