IL_7O81_036
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_036 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.1137
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7O81|1|A2|C|677
7O81|1|A2|G|678
7O81|1|A2|U|679
7O81|1|A2|A|680
7O81|1|A2|G|681
*
7O81|1|A2|U|1026
7O81|1|A2|C|1027
7O81|1|A2|A|1028
7O81|1|A2|A|1029
7O81|1|A2|G|1030
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: