IL_7O81_051
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 7O81|1|A2|G|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_051 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.1456
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7O81|1|A2|C|932
7O81|1|A2|G|933
7O81|1|A2|G|934
7O81|1|A2|G|935
7O81|1|A2|G|936
*
7O81|1|A2|C|1008
7O81|1|A2|A|1009
7O81|1|A2|A|1010
7O81|1|A2|G|1011
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Ribosomal protein eS26
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- uS15
- Chain Bc
- eL30
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