IL_7O81_080

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7O81|1|A2|C|1434, 7O81|1|A2|C|1435, 7O81|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_080 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2516

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7O81|1|A2|U|1409
7O81|1|A2|A|1410
*
7O81|1|A2|U|1433
7O81|1|A2|C|1434
7O81|1|A2|C|1435
7O81|1|A2|C|1436
7O81|1|A2|C|1437
7O81|1|A2|C|1438
7O81|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

uS9

Chain At

40S ribosomal protein uS10