IL_7O81_142

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_142 not in the Motif Atlas

Geometric match to IL_5DO4_004

Geometric discrepancy: 0.3849

The information below is about IL_5DO4_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7O81|1|B5|C|992
7O81|1|B5|G|993
7O81|1|B5|C|994
*
7O81|1|B5|G|1111
7O81|1|B5|G|1112
7O81|1|B5|A|1113
7O81|1|B5|G|1120

Current chains

Chain B5

28S rRNA

Nearby chains