IL_7O81_175

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC(PSU)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_175 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3214

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7O81|1|B5|A|1797
7O81|1|B5|C|1798
7O81|1|B5|PSU|1799
7O81|1|B5|U|1800
*
7O81|1|B5|A|1812
7O81|1|B5|A|1813
7O81|1|B5|C|1814
7O81|1|B5|U|1815

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BF

Ribosomal Protein uL30

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29