IL_7O81_177
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_177 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1646
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|B5|C|1850
7O81|1|B5|G|1851
7O81|1|B5|C|1852
7O81|1|B5|C|1853
7O81|1|B5|C|1854
7O81|1|B5|G|1855
7O81|1|B5|A|1856
7O81|1|B5|U|1857
*
7O81|1|B5|G|2003
7O81|1|B5|G|2004
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BF
- Ribosomal Protein uL30
- Chain BO
- Ribosomal protein L13a
- Chain BS
- Ribosomal protein L18a
- Chain Bf
- eL33
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