IL_7O81_187

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7O81|1|B5|G|2186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_187 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.0999

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7O81|1|B5|C|2133
7O81|1|B5|G|2134
7O81|1|B5|C|2135
*
7O81|1|B5|G|2185
7O81|1|B5|G|2186
7O81|1|B5|U|2187
7O81|1|B5|G|2188

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4

Chain Ba

60S ribosomal protein L27a

Chain Be

eL32

Chain Br

Ribosomal protein eL28