IL_7O81_197

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_197 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2124

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7O81|1|B5|C|2432
7O81|1|B5|G|2433
7O81|1|B5|A|2434
7O81|1|B5|U|2435
7O81|1|B5|C|2436
*
7O81|1|B5|G|2595
7O81|1|B5|G|2596
7O81|1|B5|G|2597
7O81|1|B5|A|2598
7O81|1|B5|G|2599

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34