IL_7O81_349

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7O81|1|B5|U|4380, 7O81|1|B5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_349 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.2619

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

7O81|1|B5|U|4378
7O81|1|B5|G|4379
7O81|1|B5|U|4380
7O81|1|B5|A|4381
7O81|1|B5|PSU|4382
7O81|1|B5|OMG|4383
*
7O81|1|B5|C|4408
7O81|1|B5|G|4409
7O81|1|B5|A|4410
7O81|1|B5|A|4411
7O81|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

eL24

Chain Bd

eL31