IL_7O9K_004

3D structure

PDB id

7O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUU*AAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O9K_004 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.247

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7O9K|1|A|C|1845
7O9K|1|A|C|1846
7O9K|1|A|U|1847
7O9K|1|A|U|1848
*
7O9K|1|A|A|1855
7O9K|1|A|A|1856
7O9K|1|A|U|1857
7O9K|1|A|G|1858

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial

Chain R

39S ribosomal protein L20, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial