IL_7OBR_013

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

7OBR|1|1|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_013 not in the Motif Atlas

Homologous match to IL_1MFQ_005

Geometric discrepancy: 0.4644

The information below is about IL_1MFQ_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7OBR|1|1|G|175
7OBR|1|1|A|176
7OBR|1|1|G|177
*
7OBR|1|1|C|220
7OBR|1|1|C|221

Current chains

Chain 1

SRP RNA

Nearby chains

Chain u

Signal recognition particle subunit SRP68