IL_7OBR_039

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

7OBR|1|5|G|666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_039 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3507

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7OBR|1|5|G|488
7OBR|1|5|C|489
7OBR|1|5|C|490
*
7OBR|1|5|G|664
7OBR|1|5|C|665
7OBR|1|5|G|666
7OBR|1|5|A|667
7OBR|1|5|C|668

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain r

eL28