IL_7OBR_102

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7OBR|1|5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_102 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.1475

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7OBR|1|5|C|2613
7OBR|1|5|C|2614
*
7OBR|1|5|G|2724
7OBR|1|5|A|2725
7OBR|1|5|G|2726

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN EL19

Chain g

60S ribosomal protein L34