IL_7OBR_125

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7OBR|1|5|A|3785, 7OBR|1|5|C|3791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_125 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1712

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7OBR|1|5|C|3781
7OBR|1|5|C|3782
7OBR|1|5|A|3783
7OBR|1|5|A|3784
7OBR|1|5|A|3785
7OBR|1|5|U|3786
7OBR|1|5|G|3787
7OBR|1|5|C|3788
7OBR|1|5|C|3789
7OBR|1|5|U|3790
7OBR|1|5|C|3791
7OBR|1|5|G|3792
*
7OBR|1|5|C|3808
7OBR|1|5|G|3809
7OBR|1|5|C|3810
7OBR|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain n

60s ribosomal protein l41