IL_7OBR_155

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_155 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2678

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7OBR|1|5|U|4632
7OBR|1|5|G|4633
7OBR|1|5|U|4634
7OBR|1|5|A|4635
7OBR|1|5|U|4636
7OBR|1|5|G|4637
*
7OBR|1|5|C|4662
7OBR|1|5|G|4663
7OBR|1|5|A|4664
7OBR|1|5|A|4665
7OBR|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

Ribosomal protein L24

Chain d

eL31