IL_7OBR_162

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUCC*GUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_162 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3539

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.1

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

7OBR|1|5|G|4768
7OBR|1|5|G|4769
7OBR|1|5|U|4770
7OBR|1|5|C|4771
7OBR|1|5|C|4772
*
7OBR|1|5|G|4863
7OBR|1|5|U|4864
7OBR|1|5|C|4865
7OBR|1|5|C|4866

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a