IL_7OBR_185

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_185 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2717

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7OBR|1|1|G|120
7OBR|1|1|U|121
7OBR|1|1|U|122
7OBR|1|1|C|123
*
7OBR|1|1|G|227
7OBR|1|1|A|228
7OBR|1|1|U|229
7OBR|1|1|C|230

Current chains

Chain 1

SRP RNA

Nearby chains

Chain u

Signal recognition particle subunit SRP68

Chain z

Signal recognition particle subunit SRP72