IL_7OBR_192

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGCC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_192 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3977

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7OBR|1|5|G|1759
7OBR|1|5|G|1760
7OBR|1|5|G|1761
7OBR|1|5|C|1762
7OBR|1|5|C|1763
*
7OBR|1|5|G|1769
7OBR|1|5|A|1770
7OBR|1|5|U|1771
7OBR|1|5|C|1772
7OBR|1|5|U|1773

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10