IL_7OBR_201

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGG*CACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_201 not in the Motif Atlas

Geometric match to IL_8C3A_437

Geometric discrepancy: 0.2186

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

7OBR|1|5|U|4991
7OBR|1|5|G|4992
7OBR|1|5|G|4993
7OBR|1|5|G|4994
*
7OBR|1|5|C|5057
7OBR|1|5|A|5058
7OBR|1|5|C|5059
7OBR|1|5|A|5060

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31

Chain z

Signal recognition particle subunit SRP72