IL_7ODE_029

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7ODE|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_029 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.096

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7ODE|1|I|U|1018
7ODE|1|I|U|1019
7ODE|1|I|A|1020
7ODE|1|I|A|1021
7ODE|1|I|G|1022
7ODE|1|I|U|1023
7ODE|1|I|G|1024
*
7ODE|1|I|C|1140
7ODE|1|I|U|1141
7ODE|1|I|A|1142
7ODE|1|I|A|1143
7ODE|1|I|A|1144

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13